Alternative splicing and genetic diversity of the white collar-1 (wc-1) gene in cereal Phaeosphaeria pathogens

The white collar-1 (wc-1) gene encodes an important light-responsive protein (wc-1) that maintains circadian clocks and controls numerous light-dependent reactions including sporulation in ascomycete fungi. The structure and expression of the wc-1 gene in wheat-biotype Phaeosphaeria nodorum (PN-w) was studied. It was shown that the full-size (3,353 bp in length) wc-1 gene in PN-w contained 4 introns in which introns 1 and 2 were flanked by GC-AG splice borders and were spliced constitutively. However, introns 3 and 4 of the wc-1 gene were alternatively spliced. As the result of alternative splicing (AS), six transcript variants were identified, encoding different lengths of deduced polypeptides (from 1,044 to 1,065aa). Ratios of the wc-1 gene transcript variants in the RNA population were the same in the sporulated and non-sporulated PN-w isolate Sn37-1 and the sporulated PN-w isolate S-79-1, grown under light/dark conditions. The AS of the wc-1 gene may control various light-dependent reactions in PN-w, which leads to diverse morphological, physiological and pathological characters for pathogen infection and spread. Based on the nucleotide and deduced amino acid sequences, the wc-1 gene in cereal Phaeosphaeria pathogens was diverse. It appeared that the deduced wc-1 polypeptide sequences of P. avenaria f. sp. avenaria (Paa), P. avenaria f. sp. triticea (Pat1 and Pat3) and barley biotype P. nodorum (PN-b) were more closely related than PN-w and Phaeosphaeeria sp. (P-rye) from Poland. Based on the wc-1 deduced polypeptide sequences, P. avenaria f. sp. triticea (Pat2) from foxtail barley (Hordeum jubatum L.) was evolutionary well separated from the other cereal Phaeosphaeria pathogens

Hadronic B Decays to Charmed Baryons

We study exclusive B decays to final states containing a charmed baryon within the pole model framework. Since the strong coupling for $\Lambda_b\bar B N$ is larger than that for $\Sigma_b \bar BN$, the two-body charmful decay $B^-\to\Sigma_c^0\bar p$ has a rate larger than $\bar B^0\to\Lambda_c^+\bar p$ as the former proceeds via the $\Lambda_b$ pole while the latter via the $\Sigma_b$ pole. By the same token, the three-body decay $\bar B^0\to\Sigma_c^{++}\bar p\pi^-$ receives less baryon-pole contribution than $B^-\to\Lambda_c^+\bar p\pi^-$. However, because the important charmed-meson pole diagrams contribute constructively to the former and destructively to the latter, $\Sigma_c^{++}\bar p\pi^-$ has a rate slightly larger than $\Lambda_c^+\bar p\pi^-$. It is found that one quarter of the $B^-\to \Lambda_c^+\bar p\pi^-$ rate comes from the resonant contributions. We discuss the decays $\bar B^0\to\Sigma_c^0\bar p\pi^+$ and $B^-\to\Sigma_c^0\bar p\pi^0$ and stress that they are not color suppressed even though they can only proceed via an internal W emission.Comment: 25 pages, 6 figure

Implications of Recent Measurements of Hadronic Charmless B Decays

Implications of recent CLEO measurements of hadronic charmless B decays are discussed. (i) Employing the Bauer-Stech-Wirbel (BSW) model for form factors as a benchmark, the $B\to\pi^+\pi^-$ data indicate that the form factor $F_0^{B\pi}(0)$ is smaller than that predicted by the BSW model, whereas the data of $B\to\omega\pi, K^*\eta$ imply that the form factors $A_0^{B\omega}(0), A_0^{BK^*}(0)$ are greater than the BSW model's values. (ii) The tree-dominated modes $B\to\pi^+\pi^-, \rho^0\pi^\pm, \omega\pi^\pm$ imply that the effective number of colors N_c(LL) for (V-A)(V-A) operators is preferred to be smaller, while the current limit on $B\to\phi K$ shows that N_c(LR)>3. The data of $B\to K\eta'$ and $K^*\eta$ clearly indicate that $N_c(LR)\gg N_c(LL)$. (iii) In order to understand the observed suppression of $\pi^+\pi^-$ and non-suppression of $K\pi$ modes, both being governed by the form factor $F_0^{B\pi}$, the unitarity angle $\gamma$ is preferred to be greater than $90^\circ$. By contrast, the new measurement of $B^\pm\to\rho^0\pi^\pm$ no longer strongly favors $\cos\gamma<0$. (iv) The observed pattern K^-\pi^+\sim \ov K^0\pi^-\sim {2\over 3}K^-\pi^0 is consistent with the theoretical expectation: The constructive interference between electroweak and QCD penguin diagrams in the $K^-\pi^0$ mode explains why {\cal B}(B^-\to K^-\pi^0)>{1\over 2}{\cal B}(\ov B^0\to K^-\pi^+). (v) The observation \nc(LL)<3<\nc(LR) and our preference for \nc(LL)\sim 2 and \nc(LR)\sim 6 are justified by a recent perturbative QCD calculation of hadronic rare B decays in the heavy quark limit.Comment: 21 pages; CLEO measurements of several charmless B decay modes are updated. Discussion of the unitarity angle gamma in the \rho\pi mode is revise

B→J/ψKB \to J/\psi K Decays in QCD Factorization

The hadronic decays $B\to J/\psi K(K^*)$ are interesting because experimentally they are the only color-suppressed modes which have been measured, and theoretically they are calculable by QCD factorization even the emitted meson $J\psi$ is heavy. We analyze the decay $B\to J\psi K$ within the framework of QCD factorization in the heavy quark limit. We show explicitly the scale and $\gamma_5$-scheme independence of decay amplitudes and infrared safety of nonfactorizable corrections at twist-2 order. Leading-twist contributions from the light-cone distribution amplitudes (LCDAs) of the mesons are too small to accommodate the data; the nonfactorizable corrections to naive factorization are small and not significant. We study the twist-3 effects due to the kaon and find that the coefficient $a_2(J\psi K)$ is largely enhanced by the nonfactorizable spectator interactions arising from the twist-3 kaon LCDA $\phi^K_\sigma$, which are formally power-suppressed but chirally, logarithmically and kinematically enhanced. Therefore, factorization breaks down at twist-3 order. Higher-twist effects of $J\psi$ are briefly discussed. Our result also resolves the long-standing sign ambiguity of $a_2(J\psi K)$, which turns out to be positive for its real part.Comment: 18 pages, 2 figures. Typos in Eqs.(3.4), (3.5), and (3.6) are correcte

B -> J/psi K^* Decays in QCD Factorization

The hadronic decay B -> J K^* is analyzed within the framework of QCD factorization. The spin amplitudes A_0, A_\parallel and A_\perp in the transversity basis and their relative phases are studied using various different form-factor models for B-K^* transition. The effective parameters a_2^h for helicity h=0,+,- states receive different nonfactorizable contributions and hence they are helicity dependent, contrary to naive factorization where a_2^h are universal and polarization independent. QCD factorization breaks down even at the twist-2 level for transverse hard spectator interactions. Although a nontrivial strong phase for the A_\parallel amplitude can be achieved by adjusting the phase of an infrared divergent contribution, the present QCD factorization calculation cannot say anything definite about the phase phi_\parallel. Unlike B -> J/psi K decays, the longitudinal parameter a_2^0 for B -> J/psi K^* does not receive twist-3 corrections and is not large enough to account for the observed branching ratio and the fraction of longitudinal polarization. Possible enhancement mechanisms for a_2^0 are discussed.Comment: 21 pages, 1 figure, a table and a reference added, some typos correcte

Updated Analysis of a_1 and a_2 in Hadronic Two-body Decays of B Mesons

Using the recent experimental data of $B\to D^{(*)}(\pi,\rho)$, $B\to D^{(*)} D_s^{(*)}$, $B\to J/\psi K^{(*)}$ and various model calculations on form factors, we re-analyze the effective coefficients a_1 and a_2 and their ratio. QCD and electroweak penguin corrections to a_1 from $B\to D^{(*)}D_s^{(*)}$ and a_2 from $B\to J/\psi K^{(*)}$ are estimated. In addition to the model-dependent determination, the effective coefficient a_1 is also extracted in a model-independent way as the decay modes $B\to D^{(*)}h$ are related by factorization to the measured semileptonic distribution of $B\to D^{(*)}\ell \bar\nu$ at $q^2=m_h^2$. Moreover, this enables us to extract model-independent heavy-to-heavy form factors, for example, $F_0^{BD}(m_\pi^2)=0.66\pm0.06\pm0.05$ and $A_0^{BD^*}(m_\pi^2)=0.56\pm0.03\pm0.04$. The determination of the magnitude of a_2 from $B\to J/\psi K^{(*)}$ depends on the form factors $F_1^{BK}$, $A_{1,2}^{BK^*}$ and $V^{BK^*}$ at $q^2=m^2_{J/\psi}$. By requiring that a_2 be process insensitive (i.e., the value of a_2 extracted from $J/\psi K$ and $J/\psi K^*$ states should be similar), as implied by the factorization hypothesis, we find that $B\to K^{(*)}$ form factors are severely constrained; they respect the relation $F_1^{BK}(m^2_{J/\psi})\approx 1.9 A_1^{BK^*}(m^2_{J/\psi})$. Form factors $A_2^{BK^*}$ and $V^{BK^*}$ at $q^2=m^2_{J/\psi}$ inferred from the measurements of the longitudinal polarization fraction and the P-wave component in $B\to J/\psi K^*$ are obtained. A stringent upper limit on a_2 is derived from the current bound on \ov B^0\to D^0\pi^0 and it is sensitive to final-state interactions.Comment: 33 pages, 2 figures. Typos in Tables I and IX are corrected. To appear in Phys. Rev.

Microgravity diode laser spectroscopy measurements in a reacting vortex ring

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/76896/1/AIAA-2001-187-556.pd

Charmless Exclusive Baryonic B Decays

We present a systematical study of two-body and three-body charmless baryonic B decays. Branching ratios for two-body modes are in general very small, typically less than $10^{-6}$, except that \B(B^-\to p \bar\Delta^{--})\sim 1\times 10^{-6}. In general, $\bar B\to N\bar\Delta>\bar B\to N\bar N$ due to the large coupling constant for $\Sigma_b\to B\Delta$. For three-body modes we focus on octet baryon final states. The leading three-dominated modes are $\bar B^0\to p\bar n\pi^-(\rho^-), n\bar p\pi^+(\rho^+)$ with a branching ratio of order $3\times 10^{-6}$ for $\bar B^0\to p\bar n\pi^-$ and $8\times 10^{-6}$ for $\bar B^0\to p\bar n\rho^-$. The penguin-dominated decays with strangeness in the meson, e.g., $B^-\to p\bar p K^{-(*)}$ and $\bar B^0\to p\bar n K^{-(*)}, n\bar n \bar K^{0(*)}$, have appreciable rates and the $N\bar N$ mass spectrum peaks at low mass. The penguin-dominated modes containing a strange baryon, e.g., $\bar B^0\to \Sigma^0\bar p\pi^+, \Sigma^-\bar n\pi^+$, have branching ratios of order $(1\sim 4)\times 10^{-6}$. In contrast, the decay rate of $\bar B^0\to\Lambda\bar p\pi^+$ is smaller. We explain why some of charmless three-body final states in which baryon-antibaryon pair production is accompanied by a meson have a larger rate than their two-body counterparts: either the pole diagrams for the former have an anti-triplet bottom baryon intermediate state, which has a large coupling to the $B$ meson and the nucleon, or they are dominated by the factorizable external $W$-emission process.Comment: 46 pages and 3 figures, to appear in Phys. Rev. D. Major changes are: (i) Calculations of two-body baryonic B decays involving a Delta resonance are modified, and (ii) Penguin-dominated modes B-> Sigma+N(bar)+p are discusse

Entangled-Photon Generation from Parametric Down-Conversion in Media with Inhomogeneous Nonlinearity

We develop and experimentally verify a theory of Type-II spontaneous parametric down-conversion (SPDC) in media with inhomogeneous distributions of second-order nonlinearity. As a special case, we explore interference effects from SPDC generated in a cascade of two bulk crystals separated by an air gap. The polarization quantum-interference pattern is found to vary strongly with the spacing between the two crystals. This is found to be a cooperative effect due to two mechanisms: the chromatic dispersion of the medium separating the crystals and spatiotemporal effects which arise from the inclusion of transverse wave vectors. These effects provide two concomitant avenues for controlling the quantum state generated in SPDC. We expect these results to be of interest for the development of quantum technologies and the generation of SPDC in periodically varying nonlinear materials.Comment: submitted to Physical Review

Spin-Charge Separation in the t−Jt-J Model: Magnetic and Transport Anomalies

A real spin-charge separation scheme is found based on a saddle-point state of the $t-J$ model. In the one-dimensional (1D) case, such a saddle-point reproduces the correct asymptotic correlations at the strong-coupling fixed-point of the model. In the two-dimensional (2D) case, the transverse gauge field confining spinon and holon is shown to be gapped at {\em finite doping} so that a spin-charge deconfinement is obtained for its first time in 2D. The gap in the gauge fluctuation disappears at half-filling limit, where a long-range antiferromagnetic order is recovered at zero temperature and spinons become confined. The most interesting features of spin dynamics and transport are exhibited at finite doping where exotic {\em residual} couplings between spin and charge degrees of freedom lead to systematic anomalies with regard to a Fermi-liquid system. In spin dynamics, a commensurate antiferromagnetic fluctuation with a small, doping-dependent energy scale is found, which is characterized in momentum space by a Gaussian peak at ($\pi/a$, $\pi/a$) with a doping-dependent width ($\propto \sqrt{\delta}$, $\delta$ is the doping concentration). This commensurate magnetic fluctuation contributes a non-Korringa behavior for the NMR spin-lattice relaxation rate. There also exits a characteristic temperature scale below which a pseudogap behavior appears in the spin dynamics. Furthermore, an incommensurate magnetic fluctuation is also obtained at a {\em finite} energy regime. In transport, a strong short-range phase interference leads to an effective holon Lagrangian which can give rise to a series of interesting phenomena including linear-$T$ resistivity and $T^2$ Hall-angle. We discuss the striking similarities of these theoretical features with those found in the high-$T_c$ cuprates and give aComment: 70 pages, RevTex, hard copies of 7 figures available upon request; minor revisions in the text and references have been made; To be published in July 1 issue of Phys. Rev. B52, (1995